rs30854911 SNP Detail

Summary

• ID
  rs30854911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145812859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTACAGTA AAGCATCCTG GCTTCCTCCA GTTCTTAACT
  GGCCAGGTTA GGTAGCAGCA GGCTAAGGTG AATAAAATAA AAAATAGCAG CAATAACAGC
  Y
  CTCTGTCTAC TGGATTTCTG AAAGTTCGTG GTCTCCAAAC ATACTTTAGG GTCAATCCCC
  CTTTTAAAAT TATGGGATAG GAATATATAA GCCTGGGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss45970376	mCV24099292	ABI	CRAMUS_MOUSE	f	SNP		C			C	T
ss51464496	NES13986605	PERLEGEN	MM_PANEL2	f	SNP	C		T	C			C		T
ss133983306	ENSMUSSNP274131	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				T
ss322074613	CHEV_6_145815653	CHEVERUD	SCREENING_POP	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs30854911					SNP	C	C	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51464496	NES13986605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145812859 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe41	basic helix-loop-helix family, member e41	1713 bp upstream
Cpgi18163	CpG island 18163	239 bp distal
Gm43909	predicted gene, 43909	1961 bp downstream
Gm67122	predicted gene, 67122	within coordinates
Gm67129	predicted gene, 67129	819 bp downstream
Rr641237	regulatory region 641237	1439 bp distal
Rr641238	regulatory region 641238	22 bp distal
Tssr59563	transcription start site region 59563	1440 bp downstream
Tssr64087	transcription start site region 64087	1774 bp upstream
Tssr64088	transcription start site region 64088	1750 bp upstream
Tssr64089	transcription start site region 64089	1721 bp upstream
Tssr64090	transcription start site region 64090	1698 bp upstream
Tssr64091	transcription start site region 64091	1659 bp upstream
Tssr64092	transcription start site region 64092	1597 bp upstream
Tssr64093	transcription start site region 64093	1576 bp upstream
Tssr64094	transcription start site region 64094	1561 bp upstream