rs30856123 SNP Detail

Summary

• ID
  rs30856123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86233962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAAGTTG CTCCCTGCCG AGCTGCTGGC CATGTGGGAT
  CTGGTGCATA GCAATCTTAC CTGTTCTGTC AAGTTCCAGG TGCTCTAATG TTGCTGAGCC
  R
  CCAGTGCGTT TGTCCTCGGG GGATACATGG CATTGTCTTT GGTCCCCTGC AGGAGGTGAA
  GGGTTTGGGC CCTCTGTGCC CCTAGGTGTG GTGAGGTAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss44970573	mCV22889936	ABI	CRAMUS_MOUSE	f	SNP		A	A			A		G
ss49436591	NES12847840	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A		A	G	A	A	A	A	A	A
ss144875351	ENSMUSSNP2927685	ENSEMBL	ENSEMBL_Sanger	f	SNP			A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30856123					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49436591	NES12847840	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86233962 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	within coordinates
Rr366828	regulatory region 366828	within coordinates
Rr414519	regulatory region 414519	1866 bp distal
Rr414520	regulatory region 414520	1779 bp proximal
Tssr7739	transcription start site region 7739	537 bp upstream