rs30856886 SNP Detail

Summary

• ID
  rs30856886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97805018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGACTGGAG GATTTGTGGA GGGGAGATCT CTTCTCGCCT
  CTCACCTTTG CGCCTTTGCC TTGCAAGTAT GAATGATCTC TTGTCCTCCT GTTTAATGCA
  Y
  GCCACATGGA TTTGTCTTCC CCATTCCCTG AATCTATAGA TGAGGGAGAA CACACTTTTG
  AATGGGAGCC CAGGAGCCTG TTGATGTAAA GTGTCTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45972830	mCV23115492	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss51375345	NES13725661	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	C	T	C	C	T	C
ss133421901	ENSMUSSNP5256823	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30856886					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375345	NES13725661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97805018 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	878 bp proximal
Tssr1945	transcription start site region 1945	741 bp downstream
Tssr57866	transcription start site region 57866	1088 bp downstream
Tssr57867	transcription start site region 57867	815 bp downstream
Tssr57868	transcription start site region 57868	793 bp downstream
Tssr57869	transcription start site region 57869	755 bp downstream
Tssr57870	transcription start site region 57870	596 bp downstream
Tssr57871	transcription start site region 57871	578 bp downstream
Tssr57872	transcription start site region 57872	182 bp upstream
Tssr57873	transcription start site region 57873	233 bp upstream
Tssr57874	transcription start site region 57874	243 bp upstream
Tssr57875	transcription start site region 57875	260 bp upstream
Tssr57876	transcription start site region 57876	295 bp upstream
Tssr57877	transcription start site region 57877	1203 bp upstream
Tssr57878	transcription start site region 57878	1247 bp upstream
Tssr57879	transcription start site region 57879	1263 bp upstream
Tssr57880	transcription start site region 57880	1316 bp upstream
Tssr57881	transcription start site region 57881	1516 bp upstream
Tssr57882	transcription start site region 57882	1614 bp upstream