rs30857072 SNP Detail

Summary

• ID
  rs30857072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38706064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCTTGC CCCTCATCGC
  CCCTCTTCCT GCGTCTATGT CTGCCTTCTG CTAACCCAGC TTCCTCCCTT TTCACACCGA
  GTTTTCTTTA TTTGAGCGCA GCCTTCTTTA TGTATATATT GGATGGAATC CAGGGTCTAA
  CTAGAGACTC CCCTGTCCCG TTACATAGTG TTACAGTTCT GCCGTCAGCC GTGCGGATTC
  Y
  CTGGGCAGAA GTAAACCTTT CTCCTGTTCC CAAACCAAAA CTGAAGAATT CGCCTGGATT
  CGTCCCTTTC CCTAAAAGCC TTCAACCTGT AATCAAAAAG TCAGTTCCAT CTCTGAAACC
  ACTCTGAGTG ACTCCTCTCC TCTCTTCCTA TACCTAGACC CTCACTTCAG GTCTCCTGTT
  CACTGCCTCG ATCCCCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44971828	mCV24885327	ABI	CRAMUS_MOUSE	f	SNP	T	C						C
ss60719295	NES16354831	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	T	C	C	T	C	C
ss148956247	ENSMUSSNP6302298	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30857072					SNP	T	C	C	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719295	NES16354831	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38706064 () rs orientation: forward

Symbol	Name	Function Class
Rr366875	regulatory region 366875	1828 bp downstream
Rr409726	regulatory region 409726	1570 bp distal
Rr409727	regulatory region 409727	872 bp distal
Rr409728	regulatory region 409728	within coordinates
Tssr11348	transcription start site region 11348	1983 bp upstream
Tssr11349	transcription start site region 11349	1971 bp upstream
Tssr11350	transcription start site region 11350	1949 bp upstream
Tssr11351	transcription start site region 11351	1384 bp upstream