rs30857088 SNP Detail

Summary

• ID
  rs30857088
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7460599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGA CAGACTGACT GACTCAGCCG
  W
  GCTCCGCAGG GAGAGAAGGA GTGCG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44971261	mCV24703229	ABI	CRAMUS_MOUSE	f	SNP		A					A	T
ss50591956	NES13643750	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A			A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30857088					SNP	A	A	A	A	A	A	A	T	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50591956	NES13643750	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7460599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	within coordinates
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	43 bp distal
Rr543686	regulatory region 543686	within coordinates
Rtn3	reticulon 3	within coordinates
Tssr5428	transcription start site region 5428	250 bp upstream
Tssr5429	transcription start site region 5429	166 bp upstream
Tssr5430	transcription start site region 5430	70 bp upstream
Tssr5431	transcription start site region 5431	54 bp downstream
Tssr157986	transcription start site region 157986	893 bp upstream
Tssr157987	transcription start site region 157987	111 bp upstream
Tssr157988	transcription start site region 157988	86 bp upstream
Tssr157989	transcription start site region 157989	24 bp upstream
Tssr157990	transcription start site region 157990	5 bp upstream
Tssr157991	transcription start site region 157991	7 bp downstream