rs30858236 SNP Detail

Summary

• ID
  rs30858236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97806290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGCTAGG AATTAACAGA AATCGTAAAA GTATACCACT
  TCCTCATTTT GCTTCTTTCT GGACTAATTA TTGTCCTTCT AAGTCCTTGG GGAGGTTAGG
  R
  CCTTGGAAGC AAATTCTGTC TAAGAGTTCA AAAGGCAACT TTCAAGTTTC TTTCTCTGCT
  ACTCCAGAGA TAATGTAGCC CCTAGGATGG AGCTCTGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45972541	mCV23115553	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss133421925	ENSMUSSNP459762	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30858236					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97806290 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr57870	transcription start site region 57870	1868 bp downstream
Tssr57871	transcription start site region 57871	1850 bp downstream
Tssr57872	transcription start site region 57872	1080 bp downstream
Tssr57873	transcription start site region 57873	1034 bp downstream
Tssr57874	transcription start site region 57874	1017 bp downstream
Tssr57875	transcription start site region 57875	997 bp downstream
Tssr57876	transcription start site region 57876	967 bp downstream
Tssr57877	transcription start site region 57877	26 bp downstream
Tssr57878	transcription start site region 57878	13 bp downstream
Tssr57879	transcription start site region 57879	within coordinates
Tssr57880	transcription start site region 57880	44 bp upstream
Tssr57881	transcription start site region 57881	244 bp upstream
Tssr57882	transcription start site region 57882	342 bp upstream
Tssr57883	transcription start site region 57883	1618 bp upstream