rs30858276 SNP Detail

Summary

• ID
  rs30858276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25189085 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATGCC CTTAGGTCCT TGTGGGCCAC
  R
  GTACATATCT GTGCTGTGTC AGGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46451074	mCV23025019	ABI	CRAMUS_MOUSE	f	SNP		G				A		G
ss51082760	NES13879827	PERLEGEN	MM_PANEL2	r	SNP	T		T	T	C		C		T		C	C		T
ss148110826	ENSMUSSNP5421958	ENSEMBL	ENSEMBL_Sanger	r	SNP		C						C
ss321497028	CHEV_5_24489905	CHEVERUD	SCREENING_POP	r	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30858276					SNP	A	G	A	A	G	A	G	G	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51082760	NES13879827	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25189085 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1500035N22Rik	RIKEN cDNA 1500035N22 gene			1755 bp upstream
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608456	regulatory region 608456			1123 bp distal
Rr608457	regulatory region 608457			78 bp distal
Rr608458	regulatory region 608458			470 bp distal
Rr608459	regulatory region 608459			333 bp distal
Rr608460	regulatory region 608460			1231 bp proximal
Rr608461	regulatory region 608461			1783 bp proximal
Tssr45452	transcription start site region 45452			1753 bp upstream