rs30858888 SNP Detail

Summary

• ID
  rs30858888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152600123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCCCTAC AGAGCATTAC
  TGGCTTAAAT TGTGATGACT TTAGTTTATC GATATTTTTT AAAAATTGTA TGCATTTCCT
  ATATCATATG TAAGACTCTA TTGGTCAAAG TCATAATTAT CCCTTTATTT TGAGGAATCT
  TGGTTTTATC TCTTACACCT AATAGTTGAT CCATTTTCAG TTGATATTTG TACAGGGTGT
  R
  GGGTAGAGCT TTGTTCCGCT TATGTAGGCA TCCACTTGTC CCTACATCAT TTGCTGAAAA
  AAAAAAACTT ATCCTTTTTC CATTTAAAGG AGACTCTAAT TTCTTCTTTC TGTTCATGAC
  ACACTGGAGG GAAAAACTAG GTAAGGGGTA AAGTACTGTA TGTCCTAACT GTGGTCAAGT
  TGACGGCCAC TCTCTTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45474338	mCV22357360	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss136104528	ENSMUSSNP964489	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321029095	CHEV_3_152557450	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30858888					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152600123 () rs orientation: forward

Symbol	Name	Function Class
Gm46830	predicted gene, 46830	1287 bp upstream
Rr82809	regulatory region 82809	458 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates