rs30859245 SNP Detail

Summary

• ID
  rs30859245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144102577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA AGTTCCCTAC TCCCAGCCTG
  R
  TCGACGGAGG GGGCAGGTCT CTGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45473556	mCV24080316	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A
ss47018648	NES10852636	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	G	G	A	A	A	A	G
ss136030726	ENSMUSSNP882417	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30859245					SNP	G	G	A	A	A	G	A	A	A	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018648	NES10852636	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144102577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	25 bp distal
Gm65349	predicted gene, 65349	77 bp upstream
Rr586642	regulatory region 586642	1324 bp distal
Rr586643	regulatory region 586643	98 bp distal
Rr586644	regulatory region 586644	within coordinates