rs30859801 SNP Detail

Summary

• ID
  rs30859801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131313587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCACTTAGT TAAAGCTAAG TAGCACTGTA GAGGGACTTT
  ACCAGAGCTG CTCCCTCATG CTGGTGGTGT GCCTCACAGA CCCCATGTGG GAGCGATGCC
  R
  CCGCCTTACT GTGTTTAGAC CATAAACCTG TATTGTACAT CTTTGTCTGC TCATGTGCCA
  AGTGCTGAGG TTTCAAAAAT AGACACAAGA AGGGGCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45474352	mCV23191339	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss51640889	NES14656453	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A		G	A	G	A	G	G	G	G	G
ss135904929	ENSMUSSNP1525784	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30859801					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51640889	NES14656453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131313587 () rs orientation: forward

Symbol	Name	Function Class
Papss1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	within coordinates
Rr74408	regulatory region 74408	319 bp proximal
Rr74409	regulatory region 74409	1467 bp proximal