CTCACTTAGT TAAAGCTAAG TAGCACTGTA GAGGGACTTT ACCAGAGCTG CTCCCTCATG CTGGTGGTGT GCCTCACAGA CCCCATGTGG GAGCGATGCC R CCGCCTTACT GTGTTTAGAC CATAAACCTG TATTGTACAT CTTTGTCTGC TCATGTGCCA AGTGCTGAGG TTTCAAAAAT AGACACAAGA AGGGGCTTT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45474352 | mCV23191339 | ABI | CRAMUS_MOUSE | f | SNP | G | G | G | G | A | ||||||||||||
ss51640889 | NES14656453 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | A | G | A | G | A | G | G | G | G | G | ||
ss135904929 | ENSMUSSNP1525784 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | A | ||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30859801 | SNP | G | G | G | G | G | G | A | G | G | A | G | A | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51640889 | NES14656453 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:131313587 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Papss1 | 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | within coordinates | ||||||
Rr74408 | regulatory region 74408 | 319 bp proximal | ||||||
Rr74409 | regulatory region 74409 | 1467 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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