rs30860020 SNP Detail

Summary

• ID
  rs30860020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:104965782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTACTCA GGACAGCTGT
  AGGAATCTCA GAGTAGGTGG ACAGAGACAA ATGTGAACAC AACTATAAGA GAGCCCCCTA
  ACAGCCAGAC CAGGATGTGC TGCCTGAGGA AAAGGCACTT AGACACTCAT AGTTGGCCTT
  TGAGTTTCCC TGTGGTCTGT TCTCTATCCA GCAGCCAAAA TGAGCTTGCT AACATCTCCC
  R
  TCTAGGGACT TTGCATTGGG TGCAAATCAA ATCTAAACCC CCATCTGAAC CACAGGCCCT
  AGAAACCCAC CTTCATCCAC TTGTCTCTTA CCCTTCTTTC TCTGGCCAAT CAGCTTCCAG
  GCACACAAAC TTCCTTAGTG CTCTGCAAGC ATGCCAAGCA GGCCCCCACC TCAGGGCTCT
  GGCACCTGCC TCTTTTACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47490923	NES11210876	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30860020					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47490923	NES11210876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:104965782 () rs orientation: forward

Symbol	Name	Function Class
Rr187257	regulatory region 187257	within coordinates
Tk2	thymidine kinase 2, mitochondrial	within coordinates
Tssr79036	transcription start site region 79036	594 bp upstream
Tssr82594	transcription start site region 82594	473 bp downstream