rs30861564 SNP Detail

Summary

• ID
  rs30861564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97805956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT GATCAGGTCT GGAGTGCGTA
  Y
  GCTTCCTTTC CCACTTTTTC TCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45972182	mCV23115530	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss133421913	ENSMUSSNP10522	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30861564					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97805956 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635225	regulatory region 635225	within coordinates
Tssr1945	transcription start site region 1945	1679 bp downstream
Tssr57867	transcription start site region 57867	1753 bp downstream
Tssr57868	transcription start site region 57868	1731 bp downstream
Tssr57869	transcription start site region 57869	1693 bp downstream
Tssr57870	transcription start site region 57870	1534 bp downstream
Tssr57871	transcription start site region 57871	1516 bp downstream
Tssr57872	transcription start site region 57872	746 bp downstream
Tssr57873	transcription start site region 57873	700 bp downstream
Tssr57874	transcription start site region 57874	683 bp downstream
Tssr57875	transcription start site region 57875	663 bp downstream
Tssr57876	transcription start site region 57876	633 bp downstream
Tssr57877	transcription start site region 57877	265 bp upstream
Tssr57878	transcription start site region 57878	309 bp upstream
Tssr57879	transcription start site region 57879	325 bp upstream
Tssr57880	transcription start site region 57880	378 bp upstream
Tssr57881	transcription start site region 57881	578 bp upstream
Tssr57882	transcription start site region 57882	676 bp upstream
Tssr57883	transcription start site region 57883	1952 bp upstream