rs30861882 SNP Detail

Summary

• ID
  rs30861882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149147744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTATAATGC TAATACAGAT CAAAAGGAAA AGCGATGAAG
  AAGTTGAAAA ACCAGAAAAA GACACCTAGT TCTGGTATGT CCAGACAACA GATGGGTAAG
  Y
  TGGATAAGAT ATGTTTGCTA TAGGGAGAGG GAAAGAAGTA CACTGACCGA TAAGCCAGGA
  AGTCATCGTT ATATGTGATT TCAAAGGAAA GGCAGGTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45473782	mCV24054270	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss51052160	NES13893075	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		T	C	T	C		C	T	T		T
ss136071425	ENSMUSSNP935055	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss321018990	CHEV_3_149105071	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30861882					SNP	T	T	T	C	T	T	T	T	T	C	T	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052160	NES13893075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149147744 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	1247 bp upstream
Gm30382	predicted gene, 30382	within coordinates