rs30862914 SNP Detail

Summary

• ID
  rs30862914
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131672254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACACCCAG TCAGAGTCAG GCAAACAGGG
  CCTTCCAGGA AAAGGAATGG AGCTTGAACC TTTCTGAGCC ACCCCCTCCA CTTTCTACTT
  CTTTTCAAGT CCTGGAAGCA GAGAGCTAGC TCTTGGTGCA TCTCGAAGTG GCTGTGTCCC
  M
  GTCCTTCTGT CTCTACACCC TTTCCTTCCC TCGCTTATTT CCCCATTTCG GGGTATTCTG
  CATGAGCTCT GTGGACTCCT ATTTGGTCCC TGTTGCTTCC ATGAAGCTAA AAGAGGTAAC
  TGGAGAGGAA GATAAGGAGC TGAAGGCAAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44972333	mCV23265301	ABI	CRAMUS_MOUSE	f	SNP	A	C				C	A
ss51365828	NES14471124	PERLEGEN	MM_PANEL2	f	SNP		C	A	C	C		A	C	C		C	C	C	C		A
ss145481821	ENSMUSSNP5753111	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C					A
ss319975142	CHEV_1_133641093	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30862914					SNP	A	C	A	C	C	C	A	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365828	NES14471124	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131672254 () rs orientation: forward

Symbol	Name	Function Class
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	487 bp downstream
Tssr8661	transcription start site region 8661	321 bp downstream