rs30863039 SNP Detail

Summary

• ID
  rs30863039
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCATGGAAAA TGAGAAACAT CCACTTGACG ACTTGAAAAA TTAAGAAATC ACTGAAAGAC
  GTGAAAAATG AGAAATAGAC ACTGTAGGAC CTGGAATATG GCGAGAAAAC TGAAAATCAC
  GGAATATGAG AAATACACAC TTTAGGAAGT TAAATAAGGC AAGGAAAACT GAAAAAGGTG
  GAAAATTTAG AAATGTCCAC TCTAGGACAT GAAATATGTC AAGAAAACTG AAAATCATGG
  AAATGAGAAA CATCCACATG AGGACTTGAA AAATGACGAA ATCACTGAAA AACGTGAAAA
  N
  TGCGAAATGC ACACTGTAGG ACCTGGAATA TGTCAAGAAA ACTGAAAATG ACGGAAAATG
  AGAAATACAC ACTTTAGGAC GTGAAATATG GCGAGAAGAA ATGAAAAGGG TGGAAAATTT
  AGAAATGTCC TTTGTAGGAC GTGGAATATG GCGAGAAAAC TGAAAATCAC GGAAAATGAG
  AAATACATAC TTTAGGACAT GAAATATGGA GAGGAAAACT GAAAATGGTG GAAAATAAAG
  AAATGTCCAC TCTAGGACTT GGAATATGGC AAGAAAACTG AAAATCATGG AAAATGAGAA
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46438900	mCV22985789	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss46451823	mCV22537178	ABI	CRAMUS_MOUSE	f	SNP			C		A
ss46461679	mCV25355358	ABI	CRAMUS_MOUSE	f	SNP	T		A		A
ss46469081	mCV25356847	ABI	CRAMUS_MOUSE	f	SNP		A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30863039					SNP	T	?	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050493 () rs orientation: forward

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1833 bp downstream
Tssr4285	transcription start site region 4285	1808 bp upstream
Tssr4286	transcription start site region 4286	1704 bp downstream
Tssr4287	transcription start site region 4287	1669 bp upstream
Tssr4288	transcription start site region 4288	1641 bp downstream
Tssr4289	transcription start site region 4289	1546 bp upstream
Tssr4290	transcription start site region 4290	1539 bp downstream
Tssr4291	transcription start site region 4291	1459 bp upstream
Tssr4292	transcription start site region 4292	1423 bp downstream
Tssr4293	transcription start site region 4293	1388 bp upstream
Tssr4294	transcription start site region 4294	1386 bp downstream
Tssr4295	transcription start site region 4295	1313 bp upstream
Tssr4296	transcription start site region 4296	1350 bp downstream
Tssr4297	transcription start site region 4297	1286 bp upstream
Tssr4298	transcription start site region 4298	1268 bp downstream
Tssr4299	transcription start site region 4299	1228 bp downstream
Tssr4300	transcription start site region 4300	1190 bp downstream
Tssr4301	transcription start site region 4301	1172 bp upstream
Tssr4302	transcription start site region 4302	1160 bp upstream
Tssr4303	transcription start site region 4303	1105 bp downstream
Tssr4304	transcription start site region 4304	1076 bp upstream
Tssr4305	transcription start site region 4305	1007 bp downstream
Tssr4306	transcription start site region 4306	988 bp upstream
Tssr4307	transcription start site region 4307	967 bp downstream
Tssr4308	transcription start site region 4308	935 bp upstream
Tssr4309	transcription start site region 4309	891 bp upstream
Tssr4310	transcription start site region 4310	844 bp downstream
Tssr4311	transcription start site region 4311	816 bp upstream
Tssr4312	transcription start site region 4312	736 bp downstream
Tssr4313	transcription start site region 4313	677 bp upstream
Tssr4314	transcription start site region 4314	665 bp downstream
Tssr4315	transcription start site region 4315	641 bp downstream
Tssr4316	transcription start site region 4316	614 bp upstream
Tssr4317	transcription start site region 4317	538 bp downstream
Tssr4318	transcription start site region 4318	514 bp upstream
Tssr4319	transcription start site region 4319	457 bp upstream
Tssr4320	transcription start site region 4320	393 bp downstream
Tssr4321	transcription start site region 4321	365 bp upstream
Tssr4322	transcription start site region 4322	266 bp downstream
Tssr4323	transcription start site region 4323	231 bp upstream
Tssr4324	transcription start site region 4324	201 bp downstream
Tssr4325	transcription start site region 4325	150 bp downstream
Tssr4326	transcription start site region 4326	112 bp upstream
Tssr4327	transcription start site region 4327	109 bp downstream
Tssr4328	transcription start site region 4328	27 bp downstream
Tssr4329	transcription start site region 4329	29 bp upstream
Tssr4330	transcription start site region 4330	74 bp upstream
Tssr4331	transcription start site region 4331	98 bp downstream
Tssr4332	transcription start site region 4332	204 bp downstream
Tssr4333	transcription start site region 4333	216 bp upstream
Tssr4334	transcription start site region 4334	238 bp downstream
Tssr4335	transcription start site region 4335	385 bp downstream
Tssr4336	transcription start site region 4336	389 bp upstream
Tssr4337	transcription start site region 4337	462 bp downstream