rs30864743 SNP Detail

Summary

• ID
  rs30864743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135388400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGA CGATGGAGTG GAATGGTGGG
  Y
  TTAGAATTCA CCACCCTGGG CCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44972509	mCV23244065	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss51379260	NES14465420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C		C	C	C	C		C	C	C	T		C
ss145534534	ENSMUSSNP4487398	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss319990133	CHEV_1_137357239	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30864743					SNP	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51379260	NES14465420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135388400 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419148	regulatory region 419148			42 bp proximal
Rr419149	regulatory region 419149			449 bp proximal
Rr419150	regulatory region 419150			681 bp proximal
Rr419151	regulatory region 419151			1685 bp proximal