rs30865169 SNP Detail

Summary

• ID
  rs30865169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105163233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAGGGT TTTAAACCTA
  AAATAACTTT TATTTTAAAA TGTCTTTCAA CAGCCCCTCT CACCGAAAAC AATCTTGCTA
  TTCCTGAATG CAATCATATT TGCTAGATTC CAAAAGAAAC CAGTCAGAAA TGCAAGATTC
  TCTTCCTTGG GGCTTTATTA TTATTTTTTT TTTTTATTAA ACCCATCAAC AAGAGGAGAC
  R
  TGGGATCTCC ATGGGATTCC AGAAACATGG GCTTGGGGTT TGAGGAAAAA TGTCCTCAAA
  GATCCTGTCC CTAGCTGATG GCATTACTGA AGGGAAATCC ACTAAGCTCT CAGTAAATTG
  CTACTCATGT GCTCCCGGCT CAGTGGTTAT TAGAAGGTGG ACTCACCCAA GGGCAAGAAG
  ACTACAGGAA GGCCGTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47492759	NES11215383	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30865169					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47492759	NES11215383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105163233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20901	CpG island 20901	357 bp distal
Dync1li2	dynein, cytoplasmic 1 light intermediate chain 2	within coordinates
Gm45731	predicted gene 45731	1659 bp upstream
Rr668693	regulatory region 668693	1294 bp distal
Rr668694	regulatory region 668694	1564 bp distal
Rr668695	regulatory region 668695	67 bp distal
Tssr82603	transcription start site region 82603	1038 bp downstream