rs30865172 SNP Detail

Summary

• ID
  rs30865172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105163358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATGCAA GATTCTCTTC
  CTTGGGGCTT TATTATTATT TTTTTTTTTT ATTAAACCCA TCAACAAGAG GAGACATGGG
  ATCTCCATGG GATTCCAGAA ACATGGGCTT GGGGTTTGAG GAAAAATGTC CTCAAAGATC
  CTGTCCCTAG CTGATGGCAT TACTGAAGGG AAATCCACTA AGCTCTCAGT AAATTGCTAC
  Y
  CATGTGCTCC CGGCTCAGTG GTTATTAGAA GGTGGACTCA CCCAAGGGCA AGAAGACTAC
  AGGAAGGCCG TTGAAGGCCA TCCTTTCCCC TTCTCTCTAC TCCTCTTTGC CTCCCTCCTA
  CAATGACGGA TGGCCTTATC ACAGGTCTAG AAATTGCCAA GTGACCATGG ACTGAGACCT
  CTGAAACCGT AAGCCAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47492762	NES11215384	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30865172					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47492762	NES11215384	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105163358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20901	CpG island 20901	482 bp distal
Dync1li2	dynein, cytoplasmic 1 light intermediate chain 2	within coordinates
Gm45731	predicted gene 45731	1534 bp upstream
Rr668693	regulatory region 668693	1419 bp distal
Rr668694	regulatory region 668694	1689 bp distal
Rr668695	regulatory region 668695	192 bp distal
Tssr82603	transcription start site region 82603	913 bp downstream