rs30866075 SNP Detail

Summary

• ID
  rs30866075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105163369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTCTTCC TTGGGGCTTT
  ATTATTATTT TTTTTTTTTA TTAAACCCAT CAACAAGAGG AGACATGGGA TCTCCATGGG
  ATTCCAGAAA CATGGGCTTG GGGTTTGAGG AAAAATGTCC TCAAAGATCC TGTCCCTAGC
  TGATGGCATT ACTGAAGGGA AATCCACTAA GCTCTCAGTA AATTGCTACT CATGTGCTCC
  Y
  GGCTCAGTGG TTATTAGAAG GTGGACTCAC CCAAGGGCAA GAAGACTACA GGAAGGCCGT
  TGAAGGCCAT CCTTTCCCCT TCTCTCTACT CCTCTTTGCC TCCCTCCTAC AATGACGGAT
  GGCCTTATCA CAGGTCTAGA AATTGCCAAG TGACCATGGA CTGAGACCTC TGAAACCGTA
  AGCCAAAACA AAGCAAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47492765	NES11215385	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30866075					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47492765	NES11215385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105163369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20901	CpG island 20901	493 bp distal
Dync1li2	dynein, cytoplasmic 1 light intermediate chain 2	within coordinates
Gm45731	predicted gene 45731	1523 bp upstream
Rr668693	regulatory region 668693	1430 bp distal
Rr668694	regulatory region 668694	1700 bp distal
Rr668695	regulatory region 668695	203 bp distal
Tssr82603	transcription start site region 82603	902 bp downstream