rs30866078 SNP Detail

Summary

• ID
  rs30866078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105163515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTACTGAA GGGAAATCCA
  CTAAGCTCTC AGTAAATTGC TACTCATGTG CTCCCGGCTC AGTGGTTATT AGAAGGTGGA
  CTCACCCAAG GGCAAGAAGA CTACAGGAAG GCCGTTGAAG GCCATCCTTT CCCCTTCTCT
  CTACTCCTCT TTGCCTCCCT CCTACAATGA CGGATGGCCT TATCACAGGT CTAGAAATTG
  Y
  CAAGTGACCA TGGACTGAGA CCTCTGAAAC CGTAAGCCAA AACAAAGCAA ACCTTCCTAC
  TGATACTCAA ACTCCACCTG CCTCTGCCTC CAGTGTACTG GGATTAAAGG CACACACCAG
  TACATCAGGC CAAAGTGTTC TTTTTTATTT ATTTATTTAC TTACTTACTT ATTTGTGTGT
  GTGTGTGTGT GTGTACTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47492768	NES11215386	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30866078					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47492768	NES11215386	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105163515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20901	CpG island 20901	639 bp distal
Dync1li2	dynein, cytoplasmic 1 light intermediate chain 2	within coordinates
Gm45731	predicted gene 45731	1377 bp upstream
Rr668693	regulatory region 668693	1576 bp distal
Rr668694	regulatory region 668694	1846 bp distal
Rr668695	regulatory region 668695	349 bp distal
Tssr82603	transcription start site region 82603	756 bp downstream