rs30866452 SNP Detail

Summary

• ID
  rs30866452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105072458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACCCCAGG CTAATCTCAA AACTCGTGGC AACCCTTACC
  TGGCTTGGTT GGATCTTTTT TCCAAAGAAA GCGCACCTGA GCAAGTGCTT TCCTGGAGCC
  R
  GTCAGCAGTG CTGTGGCTAG ACAAGAGTTC TCAGGGCAGG TCTTGGCCCT AGGATCTTCT
  CCATTAAGTA CTAAATGACT GAAGTAGGAC CTAGTTGGTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47491985	NES11218274	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30866452					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47491985	NES11218274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105072458 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	within coordinates
Rr668665	regulatory region 668665	1205 bp distal
Rr668666	regulatory region 668666	1656 bp distal
Tssr79058	transcription start site region 79058	533 bp downstream
Tssr79059	transcription start site region 79059	1127 bp upstream
Tssr79060	transcription start site region 79060	1633 bp upstream