rs30866896 SNP Detail

Summary

• ID
  rs30866896
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134433357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGATGTC GTCAGAATAG
  AACATAGGGC CAGACTCAAA CAAGCCTGAA CACTGTGTAC TTACTATCTG AGAGCTAAGT
  ACATCTGTTG CATGGGAAGT TGTGGCCTGT TGTAGCAGTT TGTGTGGAGT TGGGGAGAGA
  TTATAGGGGA GAGGGGTTTA GATGTATTCA ACTGTGAAGA GGTCCTCATA TGATTTGGCC
  W
  ACAGTTGGCA AAGCATCCCA GGGAGGGAAG GAGTAGGCAG GCAGAAGGAC AGCTCTGAAA
  GTAGACATGT TGACTAATGC TGTGTAACCA TATAAACCTA TATGTACATA GTTTGATTAA
  AAACAAAAAC AAAACAGGGC AAGCCAGGTG TGCTTGGGAC AAGCCTTTAA TCCGAGTCCT
  CAGGAGGCAG AGACAGATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678213	NES12993715	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30866896					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678213	NES12993715	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134433357 () rs orientation: forward

Symbol	Name	Function Class
Gm25612	predicted gene, 25612	156 bp downstream
Gm70637	predicted gene, 70637	149 bp downstream
Rabif	RAB interacting factor	Intron