rs30866900 SNP Detail

Summary

• ID
  rs30866900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134432862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG GCTTCCTGAG GTTATGTTTG
  Y
  GCAAAATATC AACCACCAAG GGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49678217	NES12993721	PERLEGEN	MM_PANEL2	f	SNP		T	C	T	T	C	T	T		C		T	C		T
ss145506845	ENSMUSSNP1481659	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T				C
ss319982802	CHEV_1_136401701	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30866900					SNP	T	T	C	T	T	C	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678217	NES12993721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134432862 () rs orientation: forward

Symbol	Name	Function Class
Gm25612	predicted gene, 25612	214 bp upstream
Gm70637	predicted gene, 70637	644 bp downstream
Rabif	RAB interacting factor	within coordinates