rs30867049 SNP Detail

Summary

• ID
  rs30867049
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134593340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTGGGG GGGTGGGTAT
  GGGGGACTTT TGGGATAGCA TTGAAAATGT AAACGAGGAA AATACCTAAT AATAAAAAAA
  AAGAGAGAGG GAATGGATAA TGTAGTACCA GGTTAGGCTA CTTCTAGAAG AAAGGGAACT
  ACTGGGGTTG GAAGGGAGAT TCCAGGCCTT GTAGTGTTAG TAGGTGGGAC AGAGTGAGGT
  S
  TCTCCTTGTC ACAATGTCTT GGCTTAAGCA GAAGGTTTGG TTGAGTAGAT GCAGCCTTCC
  CTGGGAGAAG AAGCATGGTG GCAGCTTTAG GGTTAGGGCT GTGGGGGTGA GAGTGGGAAA
  GAAAATCAAA TGCTAGCTGC TATTGCGTCC TTGCCGTAGG GCAGTACTGT ATTTCTGACA
  TCTTGACACC AAGGGCCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49677605	NES12989930	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30867049					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49677605	NES12989930	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134593340 () rs orientation: forward

Symbol	Name	Function Class
Rr418971	regulatory region 418971	348 bp distal
Syt2	synaptotagmin II	Intron