rs30867555 SNP Detail

Summary

• ID
  rs30867555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105072533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAGTGG CCTAGAACTC
  ACTTTGTACC CCAGGCTAAT CTCAAAACTC GTGGCAACCC TTACCTGGCT TGGTTGGATC
  TTTTTTCCAA AGAAAGCGCA CCTGAGCAAG TGCTTTCCTG GAGCCGGTCA GCAGTGCTGT
  GGCTAGACAA GAGTTCTCAG GGCAGGTCTT GGCCCTAGGA TCTTCTCCAT TAAGTACTAA
  R
  TGACTGAAGT AGGACCTAGT TGGTTAGATT TAGGGGCCAC CAGCTTCCCA CCGGGAGTCC
  CAGACACTGT CTCAGTGCTA AAAAATGAAT ACCATCCCAG ACTCATTTCT GGTCTGTTAG
  TTAAATGCTC CTGGATGCTG TCTGCCTTCA AGCCTTTGTA GCAAATGTTG GTCAGCCAGC
  TCAGAGACCA GAGCATAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47491988	NES11218275	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30867555					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47491988	NES11218275	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105072533 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	within coordinates
Rr668665	regulatory region 668665	1280 bp distal
Rr668666	regulatory region 668666	1731 bp distal
Tssr79058	transcription start site region 79058	608 bp downstream
Tssr79059	transcription start site region 79059	1052 bp upstream
Tssr79060	transcription start site region 79060	1558 bp upstream