rs30867557 SNP Detail

Summary

• ID
  rs30867557
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:105072719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTAAGTA CTAAATGACT
  GAAGTAGGAC CTAGTTGGTT AGATTTAGGG GCCACCAGCT TCCCACCGGG AGTCCCAGAC
  ACTGTCTCAG TGCTAAAAAA TGAATACCAT CCCAGACTCA TTTCTGGTCT GTTAGTTAAA
  TGCTCCTGGA TGCTGTCTGC CTTCAAGCCT TTGTAGCAAA TGTTGGTCAG CCAGCTCAGA
  S
  ACCAGAGCAT AAATGTCCAT GAACATACAT TTTGAATATT GTATGGTTTT AATGTAAAAT
  AGTTGTTTTG CAATAGAAGG ATCCTTGGCC TATATGTTAA ATATGAATAT AGCAAGCCTA
  TCCTACTTGT ACCTCCCTGG CTAATGGATA AGGGGGGAAG AACCAGGGCT CGGCAAGGGA
  CAGGACAAGT ATCAGAAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47491991	NES11218276	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	C	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30867557					SNP	G	G	G	C	G	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47491991	NES11218276	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105072719 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	Intron
Rr668665	regulatory region 668665	1466 bp distal
Rr668666	regulatory region 668666	1917 bp distal
Tssr79058	transcription start site region 79058	794 bp downstream
Tssr79059	transcription start site region 79059	866 bp upstream
Tssr79060	transcription start site region 79060	1372 bp upstream