rs30867560 SNP Detail

Summary

• ID
  rs30867560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105072782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGGGAGT CCCAGACACT
  GTCTCAGTGC TAAAAAATGA ATACCATCCC AGACTCATTT CTGGTCTGTT AGTTAAATGC
  TCCTGGATGC TGTCTGCCTT CAAGCCTTTG TAGCAAATGT TGGTCAGCCA GCTCAGAGAC
  CAGAGCATAA ATGTCCATGA ACATACATTT TGAATATTGT ATGGTTTTAA TGTAAAATAG
  Y
  TGTTTTGCAA TAGAAGGATC CTTGGCCTAT ATGTTAAATA TGAATATAGC AAGCCTATCC
  TACTTGTACC TCCCTGGCTA ATGGATAAGG GGGGAAGAAC CAGGGCTCGG CAAGGGACAG
  GACAAGTATC AGAAAACAGC CATAGCACTG GGGACAGGCA TTAGAGTGCA GTGCTTTGCC
  TCGTGAGGCA GACAATGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47491994	NES11218277	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30867560					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47491994	NES11218277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105072782 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	within coordinates
Rr668665	regulatory region 668665	1529 bp distal
Rr668666	regulatory region 668666	1980 bp distal
Tssr79058	transcription start site region 79058	857 bp downstream
Tssr79059	transcription start site region 79059	803 bp upstream
Tssr79060	transcription start site region 79060	1309 bp upstream