rs30867563 SNP Detail

Summary

• ID
  rs30867563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:105072978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTTGTTT TGCAATAGAA
  GGATCCTTGG CCTATATGTT AAATATGAAT ATAGCAAGCC TATCCTACTT GTACCTCCCT
  GGCTAATGGA TAAGGGGGGA AGAACCAGGG CTCGGCAAGG GACAGGACAA GTATCAGAAA
  ACAGCCATAG CACTGGGGAC AGGCATTAGA GTGCAGTGCT TTGCCTCGTG AGGCAGACAA
  Y
  GCCAGAATCA TCCTTATACA TAGCCAAACC CATAAAATAG CTTCGCTTGC CCTATGGTTC
  TGTGTATTTC AGTTCAGGGA TAAGAATTAC TGTCTTTGCC TTGTCCTCCT GAATAAGAGT
  GGAGAAAGGG GTGTCAGTGT ACAACTCTGC CATCCTCAGG GGAGAGGGGA TGCCTGGGAA
  TGCCTGGGCC ACCTGGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss47491997	NES11218278	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs30867563					SNP	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47491997	NES11218278	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105072978 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	Intron
Cmtm4	CKLF-like MARVEL transmembrane domain containing 4	1845 bp downstream
Rr668665	regulatory region 668665	1725 bp distal
Tssr79058	transcription start site region 79058	1053 bp downstream
Tssr79059	transcription start site region 79059	607 bp upstream
Tssr79060	transcription start site region 79060	1113 bp upstream