rs30868578 SNP Detail

Summary

• ID
  rs30868578
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137666079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAGTAAA ACAGGGATAA
  GCCCCACCCC AACTCCATCT TCTTTGCTTC CTGTTCATCT GCTGAGTGGT TCTCACTGCT
  GTGTACTCTC ATCATGGTGA CAAGGGGGTA AGGGGTCATG GCCTAAAACT GCAGATGCCA
  TCAGACAAAA TAAACTTACT TCCCTACCTG TATTCTCCCT TAGCTCAAGT ATCCATAGTG
  K
  TTATACCAGT GGGATGTGGG CTGACAAAAT GTGGTGTTTG ATCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT AATATATATA TATAGAGATT ATATATATAT GTCTTCCACT
  TTGACTAACG ACTGAAATGA GAAATTTCAA GTCCATACCA AGCTATAGGC CTAAAACTTT
  GGGTTTTTGT TTTGTTTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J
ss46992881	NES10880163	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G
ss135945617	ENSMUSSNP6553948	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J
rs30868578					SNP	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46992881	NES10880163	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137666079 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dapp1	dual adaptor for phosphotyrosine and 3-phosphoinositides 1			Intron
				Noncoding-Transcript-Variant
Rr586035	regulatory region 586035			1741 bp distal
Rr586036	regulatory region 586036			556 bp distal
Rr586037	regulatory region 586037			1531 bp proximal