rs30868583 SNP Detail

Summary

• ID
  rs30868583
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137668378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTTAAT TTCTTGCTCA
  AAAACTTGCC TTCTTTTAAG CGATTGCTAC ACTTTGCTTT GTAGCAAGAT TTGGGTCTTA
  GTGGCCCTAT GAGACTAGAC TTCTTCCCAA CAAGGTCATC GAGTTACGAT GGCTGGTCCA
  AGATGCACGC TTTCAAAGGT CTATTATTAA GGAAATGGAC AAATAAATGA ATAAAAATAA
  Y
  CATAACTCTA AACAACTGGC CTATGGATCC TGTCACCTCT GATGGTAGCT TCCCCCTGCT
  CCAAATGTTA CCAAGTATTT GTAATGAAAA CCAGTGATAT TTATTTTAAT TTTTCATGAA
  GGTGAAATAC ATGCAGTCTA TTCATAAATA GCTTATGCTC AGATGAGTCA CATGTAGATA
  AAACTTTAGT TACCATCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46992887	NES10880111	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	T	C	C	C		T	C	C	T		C
ss320977304	CHEV_3_137625581	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30868583					SNP	C	T	C	T	C	T	T	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46992887	NES10880111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137668378 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dapp1	dual adaptor for phosphotyrosine and 3-phosphoinositides 1			Intron
				Noncoding-Transcript-Variant
Rr586037	regulatory region 586037			288 bp distal
Rr586038	regulatory region 586038			864 bp proximal