rs30868708 SNP Detail

Summary

• ID
  rs30868708
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:105073086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCGGCAA GGGACAGGAC
  AAGTATCAGA AAACAGCCAT AGCACTGGGG ACAGGCATTA GAGTGCAGTG CTTTGCCTCG
  TGAGGCAGAC AATGCCAGAA TCATCCTTAT ACATAGCCAA ACCCATAAAA TAGCTTCGCT
  TGCCCTATGG TTCTGTGTAT TTCAGTTCAG GGATAAGAAT TACTGTCTTT GCCTTGTCCT
  S
  CTGAATAAGA GTGGAGAAAG GGGTGTCAGT GTACAACTCT GCCATCCTCA GGGGAGAGGG
  GATGCCTGGG AATGCCTGGG CCACCTGGGA AGGAAGCATC TGTGCTGTGA GCTAAGTAGA
  AGGGCCTGAT CTACCCTATG TGTGCCCCAA GGCCCAGCCT GCCACTAGGA TGGGAGAGGC
  CGGACCCAGG TCTCCTGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47492003	NES11218280	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30868708					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47492003	NES11218280	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105073086 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	Intron
Cmtm4	CKLF-like MARVEL transmembrane domain containing 4	1737 bp downstream
Rr668665	regulatory region 668665	1833 bp distal
Tssr79058	transcription start site region 79058	1161 bp downstream
Tssr79059	transcription start site region 79059	499 bp upstream
Tssr79060	transcription start site region 79060	1005 bp upstream