rs30869111 SNP Detail

Summary

• ID
  rs30869111
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22038081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCG CGCCGCCGCC ACCGCCAGGA
  M
  TCTCAGAGCT GGTTTTAATG GGCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39229813	mCV22932345	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	C
ss324567173	CHEV_14_22807235	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30869111					SNP	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss139201800	ENSMUSSNP4306832	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22038081 () rs orientation: forward

Symbol	Name	Function Class
A330001L22Rik	RIKEN cDNA A330001L22 gene	1608 bp upstream
Cpgi6225	CpG island 6225	1327 bp distal
Cpgi6226	CpG island 6226	within coordinates
Cpgi6227	CpG island 6227	906 bp proximal
Gm62264	predicted gene, 62264	1856 bp upstream
Rr488632	regulatory region 488632	1821 bp distal
Rr488633	regulatory region 488633	1738 bp distal
Rr488634	regulatory region 488634	1501 bp proximal
Rr488635	regulatory region 488635	1578 bp proximal
Tssr124462	transcription start site region 124462	1919 bp upstream
Tssr127699	transcription start site region 127699	504 bp upstream
Tssr127700	transcription start site region 127700	440 bp upstream
Tssr127701	transcription start site region 127701	131 bp upstream
Tssr127702	transcription start site region 127702	116 bp upstream
Tssr127703	transcription start site region 127703	4 bp upstream
Tssr127704	transcription start site region 127704	401 bp downstream
Tssr127705	transcription start site region 127705	1462 bp downstream
Zfp503	zinc finger protein 503	within coordinates