rs30869694 SNP Detail

Summary

• ID
  rs30869694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105074652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGCTGG TGCCTTTACT
  CAACCCCACG GTCGAGGCAC TAAAGGGTAA GCATACATTC TCATTAAGAT GGCGTTCTGC
  AACAGCCACA ACGTGGGGCT CCAGGGTTTA GAAACTAGTT GAGCAAGGGA CCTCAGAGCA
  GTGGCTACGA GGACATTCTG GTCATTGTCA CTGAACACGC ACTGAAAACA GGCGGGCAGT
  Y
  GGATGCGCAG AGGCAGAGGG GCTGTGCAGT GCCACACAGC CTAGCAGGCT GGTCCTTCCT
  TCTCCAGCCG CTTACAGCCT GCTGACTGTG CTCCAGCTCG ACCCACAGGG CAAGCCTGCT
  GCAAAAGTGG GACCCAAAGC CTCTGGGAGA GAAAGAAAAG ACTAAAGCGC TTTTGTTTGT
  TTGTTTTTTT AATATGTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47492012	NES11218285	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30869694					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47492012	NES11218285	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105074652 () rs orientation: forward

Symbol	Name	Function Class
Cmtm3	CKLF-like MARVEL transmembrane domain containing 3	348 bp downstream
Cmtm4	CKLF-like MARVEL transmembrane domain containing 4	171 bp downstream
Rr668667	regulatory region 668667	1039 bp proximal
Tssr79059	transcription start site region 79059	1025 bp downstream
Tssr79060	transcription start site region 79060	548 bp downstream