rs30870374 SNP Detail

Summary

• ID
  rs30870374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134423778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTTCTG AGCCCTTTTT
  TTTAAGTGTA ACATGCGATC CTATTGGATA GTACAAACTA AATTGCTTTC AGACCCTCAT
  TATAAATGGT TTGTAAGAAG CCACTGTTCT TTCAAGTGGT GGAGAGTCAC ATACAGCAGT
  GTCTGCTGCA AGAGCGTGTT CTGATGGCCT TGTCTGTGGA GTGGGTGGAA GTCCGTTTTA
  R
  TAAGAACTAC TCGGACAGGT AGTAGAGTTC TCCACTTATT TTGTAAAGTT AGTGGCCTTG
  CGGAGGGATG GAGCTGAGCC AGGGAACTGG ATCCTGACCT GCGCACTTAT TAACACCGGA
  AGAGCTGTTG AACCTCCATG ACCTTGCGCT TGCTCCTTCT GACCAAGTTG ATGAATAGGG
  AGATTTGGCA CTGTGAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49678251	NES12993948	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30870374					SNP	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678251	NES12993948	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134423778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	926 bp distal
Rabif	RAB interacting factor	Intron
Rr396314	regulatory region 396314	1275 bp downstream
Rr418928	regulatory region 418928	1382 bp distal
Rr418929	regulatory region 418929	1289 bp distal
Rr418930	regulatory region 418930	848 bp distal
Tssr8899	transcription start site region 8899	1361 bp downstream
Tssr8900	transcription start site region 8900	1277 bp downstream
Tssr8901	transcription start site region 8901	1024 bp downstream