rs30870377 SNP Detail

Summary

• ID
  rs30870377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134423641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA TTGGATAGTA CAAACTAAAT
  Y
  GCTTTCAGAC CCTCATTATA AATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss49678254	NES12993942	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T		C		T	T
ss145506469	ENSMUSSNP2744593	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
ss319982699	CHEV_1_136392480	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs30870377					SNP	C	C	T	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678254	NES12993942	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134423641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	789 bp distal
Rabif	RAB interacting factor	Intron
Rr396314	regulatory region 396314	1138 bp downstream
Rr418928	regulatory region 418928	1245 bp distal
Rr418929	regulatory region 418929	1152 bp distal
Rr418930	regulatory region 418930	711 bp distal
Tssr8899	transcription start site region 8899	1224 bp downstream
Tssr8900	transcription start site region 8900	1140 bp downstream
Tssr8901	transcription start site region 8901	887 bp downstream