rs30871104 SNP Detail

Summary

• ID
  rs30871104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134422243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA AGGATTGTCA CAAGTAACTC
  Y
  TGACACTTCC GTCCGGCAAT AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss49678261	NES12994005	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T		C	C
ss145506433	ENSMUSSNP2797905	ENSEMBL	ENSEMBL_Sanger	f	SNP					T
ss319982684	CHEV_1_136391082	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs30871104					SNP	T	T	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678261	NES12994005	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134422243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	within coordinates
Rabif	RAB interacting factor	134 bp upstream
Rr396314	regulatory region 396314	within coordinates
Rr418927	regulatory region 418927	754 bp distal
Rr418928	regulatory region 418928	within coordinates
Rr418929	regulatory region 418929	225 bp proximal
Rr418930	regulatory region 418930	666 bp proximal
Tssr8899	transcription start site region 8899	123 bp upstream
Tssr8900	transcription start site region 8900	231 bp upstream
Tssr8901	transcription start site region 8901	481 bp upstream