rs30871105 SNP Detail

Summary

• ID
  rs30871105
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134422184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTAGGCT TAATATTATC
  ACACTTTTCG CAACACTAAA TGTACTAAGC ATTATACATA CTTCTTACAT AGAAAGCAAT
  TGTTTTGTAT CTAAATCTTG CTGAGGTGTG ACCTGACCCG AATTATCGCC ATCTACTCAT
  GAGGCAAGGG AAATATCCCA AGAGTTAGTG GTAAGGCTAG CCATAGTGAT TTGCTTAGGC
  S
  AATATTAAGG GCGCCTGGGA GACCAGGTAT AGTGAAAAAG GATTGTCACA AGTAACTCCT
  GACACTTCCG TCCGGCAATA GAGAAAGGCG CCTGCGCAAT AGAGTTCAGA CGCCTGCGCA
  GAGGTACAGC GAGAGGCACG GGCGGGGCGC CCCCAGGGAC CTGCGCCAGC GTAGTTCCGG
  GTGAGCCAGC TCAGATCGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678262	NES12994004	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30871105					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678262	NES12994004	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134422184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	50 bp proximal
Rabif	RAB interacting factor	193 bp upstream
Rr396314	regulatory region 396314	18 bp upstream
Rr418927	regulatory region 418927	695 bp distal
Rr418928	regulatory region 418928	within coordinates
Rr418929	regulatory region 418929	284 bp proximal
Rr418930	regulatory region 418930	725 bp proximal
Tssr8899	transcription start site region 8899	182 bp upstream
Tssr8900	transcription start site region 8900	290 bp upstream
Tssr8901	transcription start site region 8901	540 bp upstream