rs30871107 SNP Detail

Summary

• ID
  rs30871107
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134421876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCATCATCA TGTAATGTGG GACTAACAGG GGAGCAAGAC
  TGCATTCTAG AACAGTAAGG TGGCTTAATT CCCTCGTTCT GATGTCCTAT ACACATTGCA
  M
  ACCTTAGCCT TCTTCCTGTA TTATGCCCGA GGGCATACCC TCTAAGGAAA TGACGTTTTC
  AAAATTACTA TAAGCAACGC TTTGCTACCT AATAAATGGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49678264	NES12994000	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30871107					SNP	C	C	A	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678264	NES12994000	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134421876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	358 bp proximal
Rabif	RAB interacting factor	501 bp upstream
Rr396314	regulatory region 396314	326 bp upstream
Rr418927	regulatory region 418927	387 bp distal
Rr418928	regulatory region 418928	20 bp proximal
Rr418929	regulatory region 418929	592 bp proximal
Rr418930	regulatory region 418930	1033 bp proximal
Tssr8899	transcription start site region 8899	490 bp upstream
Tssr8900	transcription start site region 8900	598 bp upstream
Tssr8901	transcription start site region 8901	848 bp upstream