rs30871108 SNP Detail

Summary

• ID
  rs30871108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134421690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCGCAA ACACAATGCA
  CTTACATGTA AGCCAAACAC TTATAAAAAA TATCTTTAAA TAAATAAGTG GGTGTGCAGT
  GGTTGTGCAT GCCTTTAATC CCAGCTAAGG TGGCCAGATC TGTCTGAGAA CAACCAGGGC
  TACACAGAGC AACCCTGCCT TGAAAAACAA ATACAGAGAT AAAAGACCCA ACATCCTAGA
  Y
  AGCTGTTTCC TAATCCATTT CTGAAATTGT TCTATTATAT TTGAGTCTAT GACCTTCTCA
  GGTTACTATT CTCACATACA CAATGTCCAT CATCATGTAA TGTGGGACTA ACAGGGGAGC
  AAGACTGCAT TCTAGAACAG TAAGGTGGCT TAATTCCCTC GTTCTGATGT CCTATACACA
  TTGCAAACCT TAGCCTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss49678265	NES12993999	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs30871108					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678265	NES12993999	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134421690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	544 bp proximal
Rabif	RAB interacting factor	687 bp upstream
Rr396314	regulatory region 396314	512 bp upstream
Rr418927	regulatory region 418927	201 bp distal
Rr418928	regulatory region 418928	206 bp proximal
Rr418929	regulatory region 418929	778 bp proximal
Rr418930	regulatory region 418930	1219 bp proximal
Tssr8899	transcription start site region 8899	676 bp upstream
Tssr8900	transcription start site region 8900	784 bp upstream
Tssr8901	transcription start site region 8901	1034 bp upstream