rs30871110 SNP Detail

Summary

• ID
  rs30871110
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134421052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTACGCAGA AATATGCTTT
  M
  GTCGCTGGTT TACAAACCAT TCTTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45110221	mCV25088190	ABI	CRAMUS_MOUSE	f	SNP		C	C				A		C
ss49678268	NES12994040	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	C	C		C	C	C	C		A	C	A	A		C
ss145506406	ENSMUSSNP4017421	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss319982677	CHEV_1_136389891	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30871110					SNP	C	C	C	A	C	C	A	C	C	C	C	C	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678268	NES12994040	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134421052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	1182 bp proximal
Rabif	RAB interacting factor	1325 bp upstream
Rr396314	regulatory region 396314	1150 bp upstream
Rr418926	regulatory region 418926	1575 bp distal
Rr418927	regulatory region 418927	416 bp proximal
Rr418928	regulatory region 418928	844 bp proximal
Rr418929	regulatory region 418929	1416 bp proximal
Rr418930	regulatory region 418930	1857 bp proximal
Tssr8899	transcription start site region 8899	1314 bp upstream
Tssr8900	transcription start site region 8900	1422 bp upstream
Tssr8901	transcription start site region 8901	1672 bp upstream