rs30871112 SNP Detail

Summary

• ID
  rs30871112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134420928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTTCTA CACAGTTCTG
  TCATAGTTAA ATCCATTCCC TTATGACGTA AAGTAACTGA TGTCCTAACC TTTACACTTT
  TCCACCACTG TCTACTTTAT CAGCAGCTCT TTCTGAAATT CAGATGTGGT TACCACAGTG
  CTTAATATAG AGCCAATTAT TGGCAAATAT TGATGTGTTT CTGTCCCCAA GCTCCATAGA
  Y
  TTCCATATCT TGTACTGTAA AGTTCAGTTT CCTTAACATG CATCAGATCC GTGGTGTTGA
  GGGGGCATAT TCTACCATTC CGATCTCATT AGTACAGTCT CTCTCTACGC AGAAATATGC
  TTTAGTCGCT GGTTTACAAA CCATTCTTAA GTTTGATCCC TTTTTTTGTT TGTTTGGTTT
  TTGTTTTTGT TTTTTTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49678270	NES12994036	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30871112					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678270	NES12994036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134420928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	1306 bp proximal
Rabif	RAB interacting factor	1449 bp upstream
Rr396314	regulatory region 396314	1274 bp upstream
Rr418926	regulatory region 418926	1451 bp distal
Rr418927	regulatory region 418927	540 bp proximal
Rr418928	regulatory region 418928	968 bp proximal
Rr418929	regulatory region 418929	1540 bp proximal
Rr418930	regulatory region 418930	1981 bp proximal
Tssr8899	transcription start site region 8899	1438 bp upstream
Tssr8900	transcription start site region 8900	1546 bp upstream
Tssr8901	transcription start site region 8901	1796 bp upstream