rs30873387 SNP Detail

Summary

• ID
  rs30873387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134337538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATCACCC CAATGCTGCA
  GCTGATCCGG GCCATCTTGA AAGTCCCTGA AGATCCAACC CAGTGCTTTC TGCTTTTTGC
  CAACCAGGTT GGTTTCCTTT TCTGAGAGCC AGCACTTCCA AGTTGGCTGT GTGACTAGAT
  GGGCTGAGAC AGACAGAACT GGCTTGGGAA CTAGTCTAGC ATCTGTCCAG AAGCCCCTCT
  R
  CGAATCCAGA GTCCTTTATA ACAATAAGAA GGAATGAGGG CACCATCAAG GAGAAGCCCA
  GGATTTGGTT TCCAGCCCCC ACAATGGCAG CTTACACCTT TCTTTAACTC CAGTTACAAG
  AGATCTGGCA CTCTCTTCTG GGCATCAGGA GCAATAGGCA CTCATGAAAT GCATTTATAC
  ACATGTAGGC AAAACACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678545	NES13000728	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30873387					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678545	NES13000728	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134337538 () rs orientation: forward

Symbol	Name	Function Class
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Tssr8884	transcription start site region 8884	1671 bp downstream