rs30873389 SNP Detail

Summary

• ID
  rs30873389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134337245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACCATT CGGCCTAATC
  TATAATGTCC TACCTCCAAG GGATCCTCCG AACAAGTGTT TTAGATGAAC TCCTTAGAAG
  GAATTCTACT CTGGCTTCTA ATGTGACTAT TAAGGTTCAG AAAAGCAGGT CCTGGTGAAC
  GTGCAGGCAG AGGTCAGAGG ATTGGCTACA GCAGGAGAGC ATATGCAGTG TGGTGATAAA
  Y
  TGAGATGACA GGGTTGCTCA GCGAAGGAGC TAGACAGAGA AGAGAGAGAG AAGAGAGAGT
  ATGCACATCT CATCGTGGGA TATCCTCATT CAGGAATCAC CCCAATGCTG CAGCTGATCC
  GGGCCATCTT GAAAGTCCCT GAAGATCCAA CCCAGTGCTT TCTGCTTTTT GCCAACCAGG
  TTGGTTTCCT TTTCTGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678547	NES13000726	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30873389					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678547	NES13000726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134337245 () rs orientation: forward

Symbol	Name	Function Class
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr418909	regulatory region 418909	1111 bp distal
Tssr8884	transcription start site region 8884	1378 bp downstream