rs30873753 SNP Detail

Summary

• ID
  rs30873753
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3036243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATGTTTCAT ATTTTCCATG ATTTTCAGTT TTCTTGCCAT GTTCCACGTC CTACAGTGGA
  CATTTCTAAA TTTTCCACCT TTTTCAGTTT TCCTCACCAT ATTTCACGTC CTAAAGTGTG
  TATTTCTCAT TTTCTGTGAT TTTTAGTTTT CCTGCCATAT TACAGGTCCT ACAGTGATCA
  TTTCTCTTTT TTCACGTTTT TCAGTAATTT CGTCATTTTT TAAGTCGTCA AGTTGATGTT
  TCTCATTTTC CATGATTTTC AGTTTTCTTG CCATATTCCA CGTCCTACAG TGGAAATTTC
  W
  ATATTTTCCA CCTTTTTCAG TTTTCCTCGA CATATTTCAC GTCCTAAAGT GTTTATTTCT
  CATTTTCTGT GGTTTTCAGT TTTCTCGCCA AATTCCAGGT CCTACAGTGT GCATTTCTCA
  TTTTGCACGT TTTTCAGTGA TTTCTTCATT TTTCAAGTCG TCAAGTGGAT GTTTCTCATT
  TTCCATGATT TTCAGTTTTC TTGCCATATT CCATGTCCTA CAGTGGACAT TTCTAAATTT
  TCCACCTTTT TCAGTTTTCC TCGCCATATT TCACGTCCTA AAGTGTGCAT TTTTCATTTT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46454506	mCV22797951	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30873753					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3036243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Cpgi21329	CpG island 21329	1765 bp proximal
Rr673614	regulatory region 673614	1293 bp distal
Rr673615	regulatory region 673615	633 bp distal
Rr673616	regulatory region 673616	418 bp proximal
Rr673617	regulatory region 673617	1218 bp proximal
Tssr83598	transcription start site region 83598	506 bp downstream
Tssr83599	transcription start site region 83599	340 bp downstream
Tssr83600	transcription start site region 83600	145 bp downstream
Tssr83601	transcription start site region 83601	72 bp upstream
Tssr83602	transcription start site region 83602	113 bp upstream
Tssr83603	transcription start site region 83603	155 bp upstream
Tssr83604	transcription start site region 83604	1087 bp upstream
Tssr83605	transcription start site region 83605	1770 bp upstream
Tssr83606	transcription start site region 83606	1939 bp upstream
Tssr88025	transcription start site region 88025	321 bp upstream
Tssr88026	transcription start site region 88026	115 bp upstream
Tssr88027	transcription start site region 88027	104 bp downstream
Tssr88028	transcription start site region 88028	143 bp downstream
Tssr88029	transcription start site region 88029	1801 bp downstream
Tssr88030	transcription start site region 88030	1940 bp downstream