rs30873871 SNP Detail

Summary

• ID
  rs30873871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134433673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAAACA AAAACAAAAC
  AGGGCAAGCC AGGTGTGCTT GGGACAAGCC TTTAATCCGA GTCCTCAGGA GGCAGAGACA
  GATATCTGTG AATTAAAGAC CAGCCAAGGA ATAGAAGACT ATGTCCCCTA ATAATAATAA
  TAATAGTGAT AGTAATAATC AGGACAGGCA CCAAAAGAGC AGCCAGCATC CTAGTGTGTG
  Y
  CCTGATGTGA TGGCTGCTGT CTTTGTTATT TTCTCCCAGC CCAGAAAGCC GCTAGGCGTC
  AGGGTCAGTG TGGGCACGTG GGAGTGAGCT GTGCCTGGAG CCAGTTCAGC TTTTATACCC
  TTATGTTCTC TCCACTGCAG CTCTTCCTCC CCTCCATGAG AAAGAAGCCA GATCTGGCCG
  ACGGCAGCAA TCCTGATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678209	NES12993693	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30873871					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678209	NES12993693	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134433673 () rs orientation: forward

Symbol	Name	Function Class
Gm25612	predicted gene, 25612	472 bp downstream
Gm70637	predicted gene, 70637	within coordinates
Rabif	RAB interacting factor	Intron