rs30874299 SNP Detail

Summary

• ID
  rs30874299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134336128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCAGGATC AGATTTCATA GCAGCTGCTA AACAGCCTAG
  GGCATGCTTT CTGTTCTGTT TGTTTACTTA GTTCCTGTTT TAAATTGACT CTAATTCTGC
  W
  CTTGGCTTCC CAGGGAATTT TAATATTCAG CCCAACAAAA AATCTCCACC TGAACTGCGA
  GTGGCGAAGA AATTGGGAAT GATTGCTGGT GGGACAGGTC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49678557	NES13000823	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30874299					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678557	NES13000823	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134336128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	1985 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr418909	regulatory region 418909	within coordinates
Tssr8884	transcription start site region 8884	261 bp downstream