rs30874301 SNP Detail

Summary

• ID
  rs30874301
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134335996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCCAAGC CTACCACCTT
  CACCAGGGGA CAATCTTCTG CCAGAGGTCT TCGTTCCGCA CTCCTCCCTT GCCTGCGCTG
  CCTCTGAATC TTCCAGGCTG TGTGGGATCA CTGGGCCCTT AAGTGTGGCT TCTGTGCCTG
  CACTGACTGA GAAGCAGACA GACATCCCAG CGCCATTGTC CTTCCTGAGT AATTGTCCCG
  K
  TCTGTTAAAC TCAAACCTCC ACTCAAGCCC GTGCCAGGAT CAGATTTCAT AGCAGCTGCT
  AAACAGCCTA GGGCATGCTT TCTGTTCTGT TTGTTTACTT AGTTCCTGTT TTAAATTGAC
  TCTAATTCTG CACTTGGCTT CCCAGGGAAT TTTAATATTC AGCCCAACAA AAAATCTCCA
  CCTGAACTGC GAGTGGCGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678559	NES13000821	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30874301					SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678559	NES13000821	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134335996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	1853 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Tssr8881	transcription start site region 8881	1932 bp downstream
Tssr8882	transcription start site region 8882	1901 bp downstream
Tssr8883	transcription start site region 8883	1873 bp downstream
Tssr8884	transcription start site region 8884	129 bp downstream