rs30874303 SNP Detail

Summary

• ID
  rs30874303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134335912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTTAGT TCTTCCCATG
  GAGACGACCC GAGTACTGTG CCCTGTCTCT GGTGATGCTC TGGACCACTA GGGAAATTCA
  CCCTGGCCCC AAGCCTACCA CCTTCACCAG GGGACAATCT TCTGCCAGAG GTCTTCGTTC
  CGCACTCCTC CCTTGCCTGC GCTGCCTCTG AATCTTCCAG GCTGTGTGGG ATCACTGGGC
  Y
  CTTAAGTGTG GCTTCTGTGC CTGCACTGAC TGAGAAGCAG ACAGACATCC CAGCGCCATT
  GTCCTTCCTG AGTAATTGTC CCGGTCTGTT AAACTCAAAC CTCCACTCAA GCCCGTGCCA
  GGATCAGATT TCATAGCAGC TGCTAAACAG CCTAGGGCAT GCTTTCTGTT CTGTTTGTTT
  ACTTAGTTCC TGTTTTAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678561	NES13000819	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30874303					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678561	NES13000819	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134335912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	1769 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr418909	regulatory region 418909	within coordinates
Tssr8881	transcription start site region 8881	1848 bp downstream
Tssr8882	transcription start site region 8882	1817 bp downstream
Tssr8883	transcription start site region 8883	1789 bp downstream
Tssr8884	transcription start site region 8884	45 bp downstream