rs30874686 SNP Detail

Summary

• ID
  rs30874686
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3036381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCAGGTTTCT CGCCATATTA CAGGTCCTAC AGTGTGCATT TCTTATTTTT CACGTTTTCC
  AGTGATTTCA TCATTTTTTA AAGTCGTCAA GTGGATGTTT CTCATTTTCC ATGATTTTCA
  GTTTTCTTGC CATATTCCAT GTCCTACAGT GGACATTTCT AAATTTTCCA CTTTTTTCAT
  TTTTCCTCGC CATATTTCAT GTTCTAAAGT GTGTAATTCT CATTTTCCGT GATTTTCAGT
  TTTCTAGCCA TATTCCAGGT CCTACAGTGT GCATTTCTCA TTTTTCACGT TTTTCAGTGA
  W
  TTCGTCATTT TTCAAGTCGT CAAGGGGATG TTTCAAATTA TCCATGATTT TCAGTTTTCT
  TATCATATTC AATGTCCTAC AGTGGACATT TCTAAATTTT CCACCTTTTT AAGTTTTCCT
  TGCCATATTT CACATACTTA GTGTGTATTT CTCATTTTCA GTTATTTTCA GTTTTCTTGC
  CATATTCCAG GTCCTACAGT GTGCATTTCT CATTTTTCAC GTTTTTCAGT GATTTCGTCA
  TTTTTCAAGT CGTCAAGGGG ATGTTTCTCA TTTTCCATGA TTTTCAGTTT TCTTGCCATA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss46455200	mCV24832035	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30874686					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3036381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	within coordinates
Cpgi21329	CpG island 21329	1627 bp proximal
Rr673614	regulatory region 673614	1431 bp distal
Rr673615	regulatory region 673615	771 bp distal
Rr673616	regulatory region 673616	280 bp proximal
Rr673617	regulatory region 673617	1080 bp proximal
Rr673618	regulatory region 673618	1920 bp proximal
Tssr83598	transcription start site region 83598	644 bp downstream
Tssr83599	transcription start site region 83599	478 bp downstream
Tssr83600	transcription start site region 83600	283 bp downstream
Tssr83601	transcription start site region 83601	38 bp downstream
Tssr83602	transcription start site region 83602	within coordinates
Tssr83603	transcription start site region 83603	17 bp upstream
Tssr83604	transcription start site region 83604	949 bp upstream
Tssr83605	transcription start site region 83605	1632 bp upstream
Tssr83606	transcription start site region 83606	1801 bp upstream
Tssr88025	transcription start site region 88025	459 bp upstream
Tssr88026	transcription start site region 88026	253 bp upstream
Tssr88027	transcription start site region 88027	8 bp upstream
Tssr88028	transcription start site region 88028	5 bp downstream
Tssr88029	transcription start site region 88029	1663 bp downstream
Tssr88030	transcription start site region 88030	1802 bp downstream