rs30875254 SNP Detail

Summary

• ID
  rs30875254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134335410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTCTAA GGGAAGGGAG
  AAAAGATTAT GGGTGTAATA CGCTCTGATT TGGTTTTCAT TACATCTCAA ATGTGGCATT
  TTCTTTCTTT CTGCCTCATC AGGTTTATCT GAAAGGTGTG CACCCCAAAT TTCCTGAAGG
  AGGGAAGATG TCTCAATACC TGGATAGCCT GAAGATTGGG GATATGGTGG AGTTCCGGGG
  R
  CCGAGCGGGT TGCTCAGTTA TGCTGGGAAA GGTGAGTATC TGTCCTTTCC TTCCTACAGT
  CTCACTTCTC CTGTCCCTAC AGTCCAAGGC CCCCAGGCCC AGCCCCAGTC CCATCTTCAA
  CCTCCTTGTT CCATTTCCCC CCAGAATCTG CATGTGTGCA TGGGTGTACC TGGGCAAAGT
  CTCCTGAAGC AACCATGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49678562	NES13000818	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30875254					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49678562	NES13000818	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134335410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	1267 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr372070	regulatory region 372070	1566 bp downstream
Tssr217	transcription start site region 217	1702 bp downstream
Tssr218	transcription start site region 218	1610 bp downstream
Tssr8875	transcription start site region 8875	1948 bp downstream
Tssr8876	transcription start site region 8876	1936 bp downstream
Tssr8877	transcription start site region 8877	1880 bp downstream
Tssr8878	transcription start site region 8878	1859 bp downstream
Tssr8879	transcription start site region 8879	1667 bp downstream
Tssr8880	transcription start site region 8880	1643 bp downstream
Tssr8881	transcription start site region 8881	1346 bp downstream
Tssr8882	transcription start site region 8882	1315 bp downstream
Tssr8883	transcription start site region 8883	1287 bp downstream
Tssr8884	transcription start site region 8884	414 bp upstream